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For the 2025 school year, there are 2 public schools serving 591 students in Lewiston, MN (there are , serving 216 private students). 73% of all K-12 students in Lewiston, MN are educated in public schools (compared to the MN state average of 90%).

The top ranked public schools in Lewiston, MN are Lewiston-altura Elementary School and Lewiston-altura Secondary. Overall testing rank is based on a school's combined math and reading proficiency test score ranking.

Lewiston, MN public schools have an average math proficiency score of 45% (versus the Minnesota public school average of 45%), and reading proficiency score of 45% (versus the 51% statewide average). Schools in Lewiston have an average ranking of 4/10, which is in the bottom 50% of Minnesota public schools.

Minority enrollment is 17% of the student body (majority Hispanic), which is less than the Minnesota public school average of 39% (majority Black and Hispanic).